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	<title>DNALC Blogs &#187; disease</title>
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	<link>http://blogs.dnalc.org</link>
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		<title>Trying to unlock a new door…..</title>
		<link>http://blogs.dnalc.org/2011/11/28/trying-to-unlock-a-new-door%e2%80%a6/</link>
		<comments>http://blogs.dnalc.org/2011/11/28/trying-to-unlock-a-new-door%e2%80%a6/#comments</comments>
		<pubDate>Mon, 28 Nov 2011 21:59:10 +0000</pubDate>
		<dc:creator><![CDATA[Jermel Watkins]]></dc:creator>
				<category><![CDATA[Your Genes, Your Health]]></category>
		<category><![CDATA[Cancer]]></category>
		<category><![CDATA[computer modeling]]></category>
		<category><![CDATA[disease]]></category>
		<category><![CDATA[drug targets]]></category>
		<category><![CDATA[Medicines]]></category>
		<category><![CDATA[neurodegeneration]]></category>
		<category><![CDATA[neurodegenerative diseases]]></category>
		<category><![CDATA[Proteins]]></category>
		<category><![CDATA[ygyh]]></category>

		<guid isPermaLink="false">http://blogs.dnalc.org/?p=4310</guid>
		<description><![CDATA[How is drug development moving along? Well, this is a very good question for we are still plagued by some elusive diseases, cancer for example. There have been many drugs developed targeting proteins involved in disease states some of which have proven to be quite effective. However today the steam engine for identifying drug targets&#8230;]]></description>
				<content:encoded><![CDATA[<p><a href="http://blogs.dnalc.org/wp-content/uploads/2011/11/door-wallpaper-13.jpg"><img src="http://blogs.dnalc.org/wp-content/uploads/2011/11/door-wallpaper-13-300x168.jpg" alt="" width="300" height="168" class="alignleft size-medium wp-image-4311" /></a>  How is drug development moving along?  Well, this is a very good question for we are still plagued by some elusive diseases, cancer for example.  There have been many drugs developed targeting proteins involved in disease states some of which have proven to be quite effective.  However today the steam engine for identifying drug targets to proteins involved in disease is becoming ever more difficult.<br />
Apparently over the past decade or so, the number of new drugs targeted toward disease has declined.  This is primarily due to the fact that developing new medicine has become more difficult to do.  It turns out that this is partly because we have sifted through all the ideal proteins that can be targeted by a drug.  The remaining proteins are not ideal for developing a targeted drug.  These proteins dawn small cavities or binding pockets and are relatively flat allowing for little to no interaction with a drug target.    Its been said that 15% of proteins can be targeted by drugs.  The percent of proteins that modify disease is 10 to 15 %.  In order to alleviate this problem scientist have acquired the help of computer modeling to more thoroughly identify and test favorable small molecules that can block the activity of these undruggable protein populations related to disease.  Dr. Stockwell an Associate professor at Columbia University, has attempted computer modeling and has come across compounds to target a class of E3 ligases, which are characteristically undruggable, and involved in just about every disease.  Of these compounds one in particularly was a potent inhibitor.  Dr. Stockwell will be publishing his findings in the next few months on the efficacy of the inhibitor.  If it proves worthy this new drug will have an impact on cancer and neurodegenerative disease.  </p>
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		<title>The Medical Sleuth</title>
		<link>http://blogs.dnalc.org/2011/10/31/the-medical-sleuth/</link>
		<comments>http://blogs.dnalc.org/2011/10/31/the-medical-sleuth/#comments</comments>
		<pubDate>Mon, 31 Oct 2011 12:52:49 +0000</pubDate>
		<dc:creator><![CDATA[Jermel Watkins]]></dc:creator>
				<category><![CDATA[Your Genes, Your Health]]></category>
		<category><![CDATA[disease]]></category>
		<category><![CDATA[dna]]></category>
		<category><![CDATA[gene]]></category>
		<category><![CDATA[gene profiling]]></category>
		<category><![CDATA[gene therapy]]></category>
		<category><![CDATA[genetics]]></category>
		<category><![CDATA[health]]></category>
		<category><![CDATA[Inheritance]]></category>
		<category><![CDATA[medical detective]]></category>
		<category><![CDATA[medical sleuth]]></category>
		<category><![CDATA[undiagnosed disease]]></category>
		<category><![CDATA[ygyh]]></category>

		<guid isPermaLink="false">http://blogs.dnalc.org/?p=4231</guid>
		<description><![CDATA[When we think of a detective the first thing that comes to mind is an investigator, either a member of a police agency or a private entity.  However there are unique detectives within the multifaceted arena of medicine.  All though we might already think of most doctors as detectives there are special doctors, units, working at&#8230;]]></description>
				<content:encoded><![CDATA[<p><a href="http://blogs.dnalc.org/wp-content/uploads/2011/10/detective.jpg"><img class="alignleft size-medium wp-image-4237" src="http://blogs.dnalc.org/wp-content/uploads/2011/10/detective-300x192.jpg" alt="" width="300" height="192" /></a><a href="http://blogs.dnalc.org/wp-content/uploads/2011/10/badge620_booksSeason1.gif"></a></p>
<p>When we think of a detective the first thing that comes to mind is an investigator, either a member of a police agency or a private entity.  However there are unique detectives within the multifaceted arena of medicine.  All though we might already think of most doctors as detectives there are special doctors, units, working at the National Institute of Health’s (NIH) undiagnosed disease program.  Doctors such as William A. Gahl at the NIH are disease detectives that try to elucidate the causes and genetic basis involved in the hundreds of unsolved and mysterious diseases that arise each year.  Dr. Gahl who was interviewed for an article in scientific American explained that his group has accepted 400 out of 1700 special cases of unsolved disease.  The selection process of these cases is tough, determining which cases are new diseases and if there is a possibility of determining the genetic and biochemical basis of the disease.   As each case is worked mutations are identified that are associated with each disease.  But Dr. Gahl States that this is only the beginning of the puzzle.  The challenge becomes to identify the genetics with the pathology.</p>
<p>Dr. Gahls’ group has been working on a case in which a patient has endured pain for approximately twenty years and muscles of their legs have turned as hard as bricks limiting mobility.  It was determined that the patient had a rare condition in which their blood vessels bore a thick coat of calcium that restricted blood flow.  One of the first steps taken in the study was to examine the parents of the patient.  The parents after examination were healthy, which lead the group to believe that the patients’ disposition might be due to a recessive mutation.  Meaning that each parent had only one copy of a unique mutation but upon having children probability lead to the patient receiving two copies of the mutation.  After an in depth study Dr. Gahls’ group identified the location of the mutation and the error prone gene associated.  The gene that was identified is NT5E.  NT5E is involved in the production of the nucleoside adenosine (which is involved in a number of biochemical processes).  To examine this gene closely doctors cultured the patients skin cells and inserted the normal gene of NT5E and even introduced adenosine alone into the cells and miraculously they observed a reduction in calcification.  Through this analysis a better understanding of adenosine in the regulation of calcium has been brought to light.  However Dr. Gahl explains that there are a number of reasons why patients cannot just receive adenosine, but there is a class of osteoporosis drugs that pose as good candidates for treatment and they are waiting to see how these drugs perform.</p>
<p>.</p>
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		<title>Model Organisms</title>
		<link>http://blogs.dnalc.org/2011/10/12/model-organisms/</link>
		<comments>http://blogs.dnalc.org/2011/10/12/model-organisms/#comments</comments>
		<pubDate>Wed, 12 Oct 2011 18:21:42 +0000</pubDate>
		<dc:creator><![CDATA[Jennifer Galasso]]></dc:creator>
				<category><![CDATA[Your Genes, Your Health]]></category>
		<category><![CDATA[autism]]></category>
		<category><![CDATA[brain]]></category>
		<category><![CDATA[chromosome]]></category>
		<category><![CDATA[disease]]></category>
		<category><![CDATA[dna]]></category>
		<category><![CDATA[Fruit flies]]></category>
		<category><![CDATA[genes]]></category>
		<category><![CDATA[genetic disease]]></category>
		<category><![CDATA[Genome]]></category>
		<category><![CDATA[model organisms]]></category>
		<category><![CDATA[organisms]]></category>

		<guid isPermaLink="false">http://blogs.dnalc.org/?p=4181</guid>
		<description><![CDATA[I asked a group of 5th graders the other day whether or not we can learn anything from studying other living things.  For example, if we mutate or change the DNA of another organism, like fruit flies (D. melanogaster), can we learn anything about what can happen when human DNA changes?  For this particular class,&#8230;]]></description>
				<content:encoded><![CDATA[<p>I asked a group of 5<sup>th</sup> graders the other day whether or not we can learn anything from studying other living things.  For example, if we mutate or change the DNA of another organism, like fruit flies (<em>D. melanogaster)</em>, can we learn anything about what can happen when human DNA changes?  For this particular class, it seemed to be an absolutely absurd question.  This could have been because the thought of fruit flies made them ill right before lunch, or they were unsure about how much we have in common with fruit flies.</p>
<p><a href="http://blogs.dnalc.org/wp-content/uploads/2011/10/220px-Drosophila_melanogaster_-_side_aka1.jpg"><img class="alignleft size-thumbnail wp-image-4184" src="http://blogs.dnalc.org/wp-content/uploads/2011/10/220px-Drosophila_melanogaster_-_side_aka1-150x150.jpg" alt="" width="150" height="150" /></a>So we got into a discussion about model organisms, those that are used as a good system to be able to compare back to human beings, and in what ways they are being used.  That we have to even figure out whether or not something has a genetic basis.  Or maybe a good treatment option for a genetic disease.  If an organism shows similar symptoms as a human disease, this will give us a better understanding on when and how the disease progresses, causes and possible treatment options.</p>
<p>This allowed one student to immediately jump into what causes Autism.  We talked about the controversy that surrounds the disorder, and ways scientists are trying to figure out the genetic basis of the disease, and how much the environment can play a role.  In our current discussion, it was a perfect way for me to bring an actual example of how other organisms are being used to find out more about a specific disorder.</p>
<p>It was shown by a group of researchers at Cold Spring Harbor Laboratory that a deletion of a group of genes on chromosome number 16 causes autism-like symptoms.  They used mouse models with the same genetic alteration to show that when fewer copies of these genes are inherited, it leads to features resembling those that are used to diagnose autism.  Changes were seen in the structure of the mouse brain (see image below) and in their overall behavior of the mice.  Using the mouse model, they are able to mimic the disease to better understand what causes it, better diagnose it, and a new possible target for intervention and treatment.</p>
<div id="attachment_4186" style="width: 160px" class="wp-caption alignleft"><a href="http://blogs.dnalc.org/wp-content/uploads/2011/10/Autismbrainstructure.jpg"><img class="size-thumbnail wp-image-4186" src="http://blogs.dnalc.org/wp-content/uploads/2011/10/Autismbrainstructure-150x150.jpg" alt="" width="150" height="150" /></a><p class="wp-caption-text">Image from http://www.cshl.edu/Article-Mills/cshl-team-finds-evidence-for-the-genetic-basis-of-autism</p></div>
<p>&nbsp;</p>
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		<title>Will insulin come to the rescue of AD patients?</title>
		<link>http://blogs.dnalc.org/2011/09/27/will-insulin-come-to-the-rescue-of-ad-patients/</link>
		<comments>http://blogs.dnalc.org/2011/09/27/will-insulin-come-to-the-rescue-of-ad-patients/#comments</comments>
		<pubDate>Tue, 27 Sep 2011 13:20:34 +0000</pubDate>
		<dc:creator><![CDATA[Jermel Watkins]]></dc:creator>
				<category><![CDATA[Your Genes, Your Health]]></category>
		<category><![CDATA[AD]]></category>
		<category><![CDATA[Alzheimer's]]></category>
		<category><![CDATA[brain]]></category>
		<category><![CDATA[brain damage]]></category>
		<category><![CDATA[cognition]]></category>
		<category><![CDATA[disease]]></category>
		<category><![CDATA[early onset]]></category>
		<category><![CDATA[late onset]]></category>
		<category><![CDATA[memory loss]]></category>
		<category><![CDATA[neurodegeneration]]></category>
		<category><![CDATA[neurodegenerative diseases]]></category>
		<category><![CDATA[neurons]]></category>
		<category><![CDATA[ygyh]]></category>

		<guid isPermaLink="false">http://blogs.dnalc.org/?p=4069</guid>
		<description><![CDATA[Alzheimer disease (AD) is a neurodegenerative disease of the brain that is divided into early- and late-onset groups. AD is characterized by the build up of amyloid plaques, neurofibrillary tangles and the loss of connections between neurons.  It is the most common type of dementia especially in the elderly.  The exact causes of AD are&#8230;]]></description>
				<content:encoded><![CDATA[<p><a href="http://blogs.dnalc.org/wp-content/uploads/2011/09/insulin-spray-Alzheimers2.jpg"><img class="alignleft size-full wp-image-4072" src="http://blogs.dnalc.org/wp-content/uploads/2011/09/insulin-spray-Alzheimers2.jpg" alt="" width="200" height="132" /></a>Alzheimer disease (AD) is a neurodegenerative disease of the brain that is divided into early- and late-onset groups. AD is characterized by the build up of amyloid plaques, neurofibrillary tangles and the loss of connections between neurons.  It is the most common type of dementia especially in the elderly.  The exact causes of AD are elusive at the moment but are most likely the result of genetics and other factors.  Scientist have been working hard to identify individual and or groups of genes responsible for the disease.  Although the scientific community has identified may genes involved in early and late onset groups, a new discovery has shed some light on the subject.  In the intimate interplay of activities within the cells of the brain scientists have identified a key player, insulin. It is thought that dysfunction of insulin plays a crucial part in the exacerbation of symptoms.</p>
<p>The regions of the brain such as the hippocampus and the frontal cortex are densely populated with insulin receptors.  As well they are found in synapses in which insulin signaling participates in synaptic remodeling and synaptogenesis (1,2). In parallel insulin regulates<sup> </sup>the utilization of glucose in the hippocampus and other regions of the brain to promote optimal memory in normal metabolism (3).  In AD, it has been shown that reduced levels of insulin and insulin activity exist (4,5).  Interestingly insulin has a tight relationship to amyloid beta, a toxic peptide responsible for the onset of the disease.  Insulin can regulate the levels of amyloid beta to deliver protection from the degenerative nature of the peptide on neurons (6-8).</p>
<p>A pilot clinical trial published in the archives of neurology titled,  Intranasal Insulin Therapy for Alzheimer Disease and Amnestic Mild Cognitive Impairment, has shown insulin’ ability to be a protective new therapy in the fight against AD.  The trial hosted 104 participants, of which 30 participated in the use of a placebo, while insulin at 20IU and 40IU were delivered to 36 and 38 participants respectively.  The insulin was administered through a nasal drug delivery device for a total of 4 months. Surprisingly the 20IU and 40IU group experienced improved memory recall and preserved general cognition.</p>
<p>It was very important to identify a method of administration of insulin properly and direct to the brain without disrupting blood sugar levels.  When taken as a nasal spray it reaches the brain in just a few minutes with no apparent adverse affects on the body. Although a very promising study, it is still a preliminary study, more research will have to be carried out to ensure the safety and effectiveness of insulin as a therapy for longterm use against AD.</p>
<ol>
<li>Chiu SL, Chen CM, Cline HT. Insulin receptor signaling regulates synapse number, dendritic plasticity, and circuit function in vivo. <em>Neuron.</em> 2008;58(5):708-719. <a href="http://archneur.ama-assn.org/cgi/external_ref?access_num=18549783&amp;link_type=MED">PUBMED</a></li>
<li>Zhao WQ, Townsend M. Insulin resistance and amyloidogenesis as common molecular foundation for type 2 diabetes and Alzheimer&#8217;s disease. <em>Biochim Biophys Acta.</em> 2009;1792(5):482-496. <a href="http://archneur.ama-assn.org/cgi/external_ref?access_num=19026743&amp;link_type=MED">PUBMED</a></li>
<li>McNay EC, Ong CT, McCrimmon RJ, Cresswell J, Bogan JS, Sherwin RS. Hippocampal memory processes are modulated by insulin and high-fat-induced insulin resistance. <em>Neurobiol Learn Mem.</em> 2010;93(4):546-553. <a href="http://archneur.ama-assn.org/cgi/external_ref?access_num=20176121&amp;link_type=MED">PUBMED</a></li>
<li>Craft S, Peskind E, Schwartz MW, Schellenberg GD, Raskind M, Porte D Jr. Cerebrospinal fluid and plasma insulin levels in Alzheimer&#8217;s disease: relationship to severity of dementia and apolipoprotein E genotype. <em>Neurology.</em> 1998;50(1):164-168. <a href="http://archneur.ama-assn.org/cgi/ijlink?linkType=ABST&amp;journalCode=neurology&amp;resid=50/1/164"><strong>FREE</strong> FULL TEXT</a></li>
<li>Steen E, Terry BM, Rivera EJ; et al. Impaired insulin and insulin-like growth factor expression and signaling mechanisms in Alzheimer&#8217;s disease—is this type 3 diabetes? <em>J Alzheimers Dis.</em> 2005;7(1):63-80. <a href="http://archneur.ama-assn.org/cgi/external_ref?access_num=15750215&amp;link_type=MED">PUBMED</a></li>
<li>De Felice FG, Vieira MN, Bomfim TR; et al. Protection of synapses against Alzheimer’s-linked toxins: insulin signaling prevents the pathogenic binding of Abeta oligomers. <em>Proc Natl Acad Sci U S A.</em> 2009;106(6):1971-1976. <a href="http://archneur.ama-assn.org/cgi/ijlink?linkType=ABST&amp;journalCode=pnas&amp;resid=106/6/1971"><strong>FREE</strong> FULL TEXT</a></li>
<li>Gasparini L, Gouras GK, Wang R; et al. Stimulation of beta-amyloid precursor protein trafficking by insulin reduces intraneuronal beta-amyloid and requires mitogen-activated protein kinase signaling. <em>J Neurosci.</em> 2001;21(8):2561-2570. <a href="http://archneur.ama-assn.org/cgi/ijlink?linkType=ABST&amp;journalCode=jneuro&amp;resid=21/8/2561"><strong>FREE</strong> FULL TEXT</a></li>
<li>Lee CC, Kuo YM, Huang CC, Hsu KS. Insulin rescues amyloid beta-induced impairment of hippocampal long-term potentiation. <em>Neurobiol Aging.</em> 2009;30(3):377-387. <a href="http://archneur.ama-assn.org/cgi/external_ref?access_num=17692997&amp;link_type=MED">PUBMED</a></li>
</ol>
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		<title>Cancer Genomics: so many mutations!</title>
		<link>http://blogs.dnalc.org/2011/02/18/cancer-genomics-so-many-mutations/</link>
		<comments>http://blogs.dnalc.org/2011/02/18/cancer-genomics-so-many-mutations/#comments</comments>
		<pubDate>Fri, 18 Feb 2011 16:14:43 +0000</pubDate>
		<dc:creator><![CDATA[Bruce Nash]]></dc:creator>
				<category><![CDATA[Inside Cancer]]></category>
		<category><![CDATA[Cancer]]></category>
		<category><![CDATA[diagnosis]]></category>
		<category><![CDATA[disease]]></category>
		<category><![CDATA[dna]]></category>
		<category><![CDATA[genomics]]></category>
		<category><![CDATA[mutations]]></category>
		<category><![CDATA[Sequencing]]></category>
		<category><![CDATA[treatment]]></category>

		<guid isPermaLink="false">http://3.178</guid>
		<description><![CDATA[The human genome is the complete collection of over three billion bases in each of our cells. Cancers accumulate multiple changes, or mutations, in their DNA that contribute to the disease by changing how cells behave. For instance, cancers need nutrients to grow. Very often, they get these nutrients by producing signals that encourage new&#8230;]]></description>
				<content:encoded><![CDATA[<p><a href="http://blogs.dnalc.org/wp-content/uploads/2011/02/network-300x198.gif"><img class="alignleft size-thumbnail wp-image-3471" title="network-300x198" src="http://blogs.dnalc.org/wp-content/uploads/2011/02/network-300x198-150x150.gif" alt="" width="150" height="150" /></a>The human genome is the complete collection of over three billion bases in each of our cells. Cancers accumulate multiple changes, or mutations, in their DNA that contribute to the disease by changing how cells behave. For instance, cancers need nutrients to grow. Very often, they get these nutrients by producing signals that encourage new blood vessel formation. Finding the mutations that lead to cancer is very difficult. For one thing, even for cancers that affect the same tissue and look similar, the mutations can be very different. Also, one of the hallmarks of cancer is an increased rate of mutation. This means that cancer cells have many mutations, and most don’t contribute to the disease. For example, a lung cancer genome that was sequenced this year had nearly 23,000 mutations. Finding a mutation that contributes to cancer is like finding the right needle from a collection of needles in a haystack.</p>
<p>To find these driver mutations, scientists look for the ones that occur frequently. Until recently, this was very difficult to do. However, new sequencing technologies now let scientists look for mutations in genes at an incredible rate. The cost of sequencing is dropping dramatically; to the point where in the near future sequencing the DNA from a cancer may be sequenced as a diagnostic. Soon, it may be the cost of computing that limits our sequencing efforts.</p>
<p>Improvements in technology allow scientists to look at the genomes of many tumors, and there is an international effort to look at 25000 cancer genomes. This will provide the data that will let them find the mutations that lead to cancer, even if they occur in a small proportion of tumors of a particular kind. Already, hundreds of tumors have been studied in detail, which is giving scientists a good feel for the patterns of mutations that happen in cancer cells. So far, over 400 genes directly linked to cancer have been identified in this and other studies. Figuring out how these many genes contribute to cancer is likely to lead to huge advances in diagnosis and treatment, although the task remains gargantuan.</p>
<p>&nbsp;</p>
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		<title>RBD and Neurodegeneration</title>
		<link>http://blogs.dnalc.org/2010/09/02/rbd-and-neurodegeneration/</link>
		<comments>http://blogs.dnalc.org/2010/09/02/rbd-and-neurodegeneration/#comments</comments>
		<pubDate>Thu, 02 Sep 2010 12:59:20 +0000</pubDate>
		<dc:creator><![CDATA[Jennifer Aiello]]></dc:creator>
				<category><![CDATA[G2C Online]]></category>
		<category><![CDATA[disease]]></category>
		<category><![CDATA[neurodegenerative diseases]]></category>
		<category><![CDATA[RBD]]></category>
		<category><![CDATA[REM sleep behavior disorder]]></category>
		<category><![CDATA[sleep disorder]]></category>

		<guid isPermaLink="false">http://4.407</guid>
		<description><![CDATA[In an earlier post I blogged about the nature of dreams including phases of sleep and why we dream. In the blog I had mentioned a sleep disorder known as REM sleep behavior disorder (or RBD). It’s a mysterious sleep disturbance where the normal atonia (muscle paralysis) during sleep malfunctions, and the dreamer is left&#8230;]]></description>
				<content:encoded><![CDATA[<p><a href="http://blogs.dnalc.org/wp-content/uploads/2010/09/3101400087_b3cd617096.jpg"><img class="alignleft size-thumbnail wp-image-3422" title="3101400087_b3cd617096" src="http://blogs.dnalc.org/wp-content/uploads/2010/09/3101400087_b3cd617096-150x150.jpg" alt="" width="150" height="150" /></a>In an earlier post I blogged about the nature of dreams including phases of sleep and why we dream. In the blog I had mentioned a sleep disorder known as REM sleep behavior disorder (or RBD). It’s a mysterious sleep disturbance where the normal atonia (muscle paralysis) during sleep malfunctions, and the dreamer is left to act out their dreams. Those with this disorder (predominantly male) tend to have dreams that are increasingly violent and involve fighting off an attacker. In their sleep, these people act out every punch, kick, twist and scream with their sleeping bodies, often times injuring the person sharing the bed with them.</p>
<p>This disorder was thought to be an isolated condition, but doctors conducting follow-up studies on diagnosed patients are starting to rethink that. Anywhere from 80 to 100 percent of these RBD patients later develop neurodegenerative diseases such as Parkinson’s disease.</p>
<p>Doctors studying their patients conclude that there is a minimum of a 15 year difference between the onset of RBD and the onset of a neurological disorder. In some patients, the time between onsets was as much as 50 years. However long it is, this sleep disorder seems to prelude the disease by a significant amount of time. Doctors are hoping that this will allow the patient to be treated for a disease <em>before</em> the disease actually manifests. Perhaps one day if there is a neuroprotective treatment available, it can be used to treat these patients before the severe deterioration of their brain.</p>
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		<title>Recycled DNA</title>
		<link>http://blogs.dnalc.org/2010/08/25/recycled-dna/</link>
		<comments>http://blogs.dnalc.org/2010/08/25/recycled-dna/#comments</comments>
		<pubDate>Wed, 25 Aug 2010 18:55:24 +0000</pubDate>
		<dc:creator><![CDATA[Erin McKechnie]]></dc:creator>
				<category><![CDATA[DNA From The Beginning]]></category>
		<category><![CDATA[disease]]></category>
		<category><![CDATA[dna]]></category>
		<category><![CDATA[junk DNA]]></category>
		<category><![CDATA[muscular dystrophy]]></category>

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		<description><![CDATA[The majority of our DNA does not code for protein or RNA and does not seem to regulate how the information is used.  Sometimes referred to as “junk” DNA, these regions make up about 98.5 % of our genome.  Is this DNA really junk? Scientists have recently identified a section of “junk” DNA that can&#8230;]]></description>
				<content:encoded><![CDATA[<p><a href="http://blogs.dnalc.org/wp-content/uploads/2010/08/recycle.png"><img class="alignleft size-full wp-image-3418" title="recycle" src="http://blogs.dnalc.org/wp-content/uploads/2010/08/recycle.png" alt="" width="120" height="116" /></a>The majority of our DNA does not code for protein or RNA and does not seem to regulate how the information is used.  Sometimes referred to as “junk” DNA, these regions make up about 98.5 % of our genome.  Is this DNA really junk?</p>
<p>Scientists have recently identified a section of “junk” DNA that can regain function and cause disease. The section of DNA is made of repeat regions of the same sequence. They found that individuals who have 1-10 repeats on the end of chromosome 4 can develop one of the most common forms of muscular dystrophy, FSHD. The goal now is to identify a way to turn off this once non-functioning gene.</p>
<p>One of the important insights from the resurrection of this gene is that although some diseases can be easily explained, others result from very complicated cellular interactions. What other information will our “junk”DNA reveal in the future?</p>
<p>To learn more about the effects of this gene being turned on read the paper published in Science: <a href="http://www.sciencemag.org/cgi/rapidpdf/science.1189044.pdf">http://www.sciencemag.org/cgi/rapidpdf/science.1189044.pdf</a></p>
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		<title>Fighting Addiction</title>
		<link>http://blogs.dnalc.org/2010/08/13/fighting-addiction/</link>
		<comments>http://blogs.dnalc.org/2010/08/13/fighting-addiction/#comments</comments>
		<pubDate>Fri, 13 Aug 2010 15:17:53 +0000</pubDate>
		<dc:creator><![CDATA[Jennifer Aiello]]></dc:creator>
				<category><![CDATA[G2C Online]]></category>
		<category><![CDATA[addiction]]></category>
		<category><![CDATA[brain]]></category>
		<category><![CDATA[disease]]></category>
		<category><![CDATA[dopamine]]></category>
		<category><![CDATA[Genome]]></category>
		<category><![CDATA[Inheritance]]></category>
		<category><![CDATA[neurobiology]]></category>

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		<description><![CDATA[Having an addiction can be devastating, to those that have it and to those that are exposed to it. The addiction can be to a variety of different things such as alcohol, drugs, gambling, internet shopping, video games or even work. But what causes these addictions? Why do some people have the ability to enjoy&#8230;]]></description>
				<content:encoded><![CDATA[<p><a href="http://blogs.dnalc.org/wp-content/uploads/2010/08/smoking.jpg"><img class="alignleft size-thumbnail wp-image-3416" title="smoking addiction" src="http://blogs.dnalc.org/wp-content/uploads/2010/08/smoking-150x150.jpg" alt="" width="150" height="150" /></a>Having an addiction can be devastating, to those that have it and to those that are exposed to it. The addiction can be to a variety of different things such as alcohol, drugs, gambling, internet shopping, video games or even work. But what causes these addictions? Why do some people have the ability to enjoy these things, yet leave them, while others seem to never be able to stop?</p>
<p>Well, it could be your family and it could be your environment. Studies have shown that addictions run in families. In fact, if a parent has an addiction, the child is 4 to 8 times more likely to have an addiction as well. It doesn’t necessarily have to be the same addiction, but an addiction nonetheless. Those with other family members with an addiction are more susceptible to the disease, but that also doesn’t mean that the disease is inevitable.</p>
<p>Saying that addiction runs in the family would speculate a possible genetic component. In fact, researchers are currently trying to link addiction to a cluster of genes in the human genome. Scientists are looking for “addiction genes” that are biologically different from others that might make someone prone to addiction. It also might affect the severity of withdrawals.</p>
<p>For example, in humans, a candidate gene for addiction includes the A1 allele of dopamine receptor gene DRD2 which is common in those with alcohol and cocaine addictions. Also, non-smokers are more likely to carry a protective gene, CYP2A6, which causes them to feel more nausea and dizziness from smoking.</p>
<p>Mice have been a model for studies on human addiction because the reward pathway functions in mice are very similar to those in the human brain.</p>
<p>Mice bred to lack serotonin receptor gene Htr1b are more attracted to cocaine and alcohol. Those with low levels of neuropeptide Y drink more alcohol while those with higher levels tend to abstain from alcohol.</p>
<p>It mainly all comes down to the reward pathway in our brains. The reward pathway is in the center of our brain and connects to other areas such as those controlling memory and behavior. It’s responsible for driving our feelings of motivation, rewards and behavior. The main job of the pathway is to make us feel good when we engage in behaviors essential to survival such as eating and drinking. Places in the brain gather information about what’s happening outside of our body and then strengthen circuits within the brain that control desirable behavior.</p>
<p>For instance, say you’re thirsty and someone hands you a cold water bottle. The brain will tell you that there’s cold water in front of you. Stored in your brain is a memory that says “if you drink that water, you won’t be thirsty anymore and you’ll feel good!” So you’ll drink the water. While drinking, you’re 5 senses will send a single to your brain about drinking the water. The brain, in response will release dopamine, giving you a jolt of pleasure which is your instant reward. The reward pathway will make you repeat the behavior for the same dopamine reward, like a dog doing a trick for a dog biscuit. The wiring in your brain for that particular activity has been strengthened.</p>
<p>Despite the genetic link, it’s not all due to our DNA makeup. Essentially, addiction is the combination of the interaction of several genes (not just a single gene) with social and environmental factors. Also, just because someone has all that’s necessary for an addiction doesn’t mean they’ll have an addiction problem. For example, I know I have an addictive personality but I look for other ways to expel or sedate the addiction and to put that addictive capability to better use.</p>
<p>Researchers have been searching for ways to treat and prevent addictions. One way is the identification of genes. The genes can become “drug targets,” in which researchers can work to modify the gene product’s activity resulting in stabilizing or reversing pathways to restore the brain to proper function.</p>
<p>Earlier this year, researchers at UT Southwestern Medical Center have a new hypothesis. They hope that by increasing a process known as neurogenesis it might prevent or treat addiction. Neurogenesis is a normally occurring process of making nerve cells in the brain. In previous studies, blocking neurogenesis had increased a rodent’s vulnerability for cocaine addiction and relapse. They hope that by stimulating the increase of neurogenesis, it might combat addiction. Another application is to use this increased neurogenesis in situations where a patient is required to use a potentially addicted medication such as Vicodin, a severe pain killer with a high addiction rate. Perhaps this treatment may be used in those who have quit their addiction in order to prevent a relapse.</p>
<p>Recently, new research focusing on microRNA (miRNA) and gene expression might also have a potential effect on the fight with addiction. miRNAs are used in gene expression regulation and gene silencing. They bind to complementary mRNA strands and prevent translation to a protein. Raising the levels of miR-212, an miRNA, in the brains of cocaine-using rats have caused the rodents to take in less of the drug. Completely blocking the miRNA, and allowing full gene expression, increased the drug use. This would suggest a new drug target- a medication to raise miR-212 levels or at least creating something to mimic the miRNA’s function. Liked to miR-212 is an increase in the protein CREB. CREB holds promise in fighting drug addiction by decreasing the reward response, sometimes actually creating an <em>aversion </em>to it all together. The only obstacle with CREB drug targets is the regulation of it. The level cannot become too low (where the rewards are increased) because it can lead to addiction and anxiety, but it cannot become too high (where nothing is rewarding) which can lead to depression. This study has only been done with cocaine and is currently under investigation for the applications in nicotine and alcohol addictions.</p>
<p>Someday, possibly, there will be ways for those suffering from addictions, whether they be chemical addictions, which is heavily mentioned here, or an addiction to more physical things to overcome that addiction and lead healthier lives.</p>
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		<title>Why no cure for cancer?</title>
		<link>http://blogs.dnalc.org/2010/08/05/why-no-cure-for-cancer/</link>
		<comments>http://blogs.dnalc.org/2010/08/05/why-no-cure-for-cancer/#comments</comments>
		<pubDate>Thu, 05 Aug 2010 15:52:23 +0000</pubDate>
		<dc:creator><![CDATA[admin]]></dc:creator>
				<category><![CDATA[Inside Cancer]]></category>
		<category><![CDATA[Cancer]]></category>
		<category><![CDATA[cancer cure]]></category>
		<category><![CDATA[disease]]></category>
		<category><![CDATA[treatment]]></category>

		<guid isPermaLink="false">http://3.176</guid>
		<description><![CDATA[I was looking through some of the comments on the blog and thought I would address a few of them, as I imagine others would have similar questions. One reader wanted to know why some cancers are more fatal than others. For example, the five-year survival rate for prostate cancer is nearly 99%, while it&#8230;]]></description>
				<content:encoded><![CDATA[<p><a href="http://blogs.dnalc.org/wp-content/uploads/2010/08/4024368125_6cee3d572d.jpg"><img class="alignleft size-thumbnail wp-image-3410" title="B0006421 Breast cancer cells" src="http://blogs.dnalc.org/wp-content/uploads/2010/08/4024368125_6cee3d572d-150x150.jpg" alt="" width="150" height="150" /></a>I was looking through some of the comments on the blog and thought I would address a few of them, as I imagine others would have similar questions. One reader wanted to know why some cancers are more fatal than others. For example, the five-year survival rate for prostate cancer is nearly 99%, while it is 4% for pancreatic cancer. There are several reasons for this. First, some cancers are by nature slow growing and unlikely to spread through the body, like prostate cancers, while other cancers are very aggressive and often metastasize. Another issue is diagnosis: there are good diagnostic tools for some cancers, which allows doctors to identify them early enough to allow treatment, while other cancers are difficult to detect until treatment is unlikely to work. Finally, some cancers can be treated, while others are very difficult to treat. This can be because of the nature of the tissue. For instance, some thyroid cancers can be &#8220;cured&#8221; by completely removing the thyroid. This is possible because we can replace thyroid hormone easily. Similarly, skin cancers can often be cured by cutting out the affected skin. It is much more difficult or impossible to remove other tissues- for instance, parts of the brain. Cancers in different tissues also have distinct molecular changes to their DNA. This means that they respond differently to therapeutics. For some cancers, these are very effective, while others don’t respond.</p>
<p>Another reader wanted to know why there are cures for other diseases, but not for cancer. There are many reasons for this, of which I&#8217;ll mention a few. First, cancers are the result of our own cells acting abnormally. This means that many of the treatments we might want to use to kill cancer cells would also kill our normal cells. The challenge is to identify the differences between our normal cells and their cancerous relatives and then to identify weaknesses in the cancer cells. This in itself is very difficult. However, it is much more difficult because cancers are not all the same. As I mentioned above, cancers in different tissues arise by distinct changes, so a drug for one cancer may have no effect on another. Even worse, different cancers within a particular tissue are different. In fact, within one tumor, the different cells can have different mutations, and these can affect how the cells respond to therapy or allow the cancer to develop drug resistance. So, cancer isn’t just one disease- it is many related diseases. In fact, calling for &#8220;a cure&#8221; for cancer isn&#8217;t really fair; what will be needed are many cures for this family of diseases.</p>
<p>I know I&#8217;ve probably produced more questions than answers, but I hope that this helps some of you.</p>
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		<title>Genes Don&#8217;t Exist to Cause Disease</title>
		<link>http://blogs.dnalc.org/2010/02/17/genes-dont-exist-to-cause-disease/</link>
		<comments>http://blogs.dnalc.org/2010/02/17/genes-dont-exist-to-cause-disease/#comments</comments>
		<pubDate>Wed, 17 Feb 2010 21:47:32 +0000</pubDate>
		<dc:creator><![CDATA[Amanda McBrien]]></dc:creator>
				<category><![CDATA[DNA From The Beginning]]></category>
		<category><![CDATA[disease]]></category>
		<category><![CDATA[genes]]></category>
		<category><![CDATA[hemophilia]]></category>
		<category><![CDATA[Inheritance]]></category>
		<category><![CDATA[Links]]></category>
		<category><![CDATA[resources]]></category>

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		<description><![CDATA[It is not uncommon during labs on mutations, to discuss that mutations can cause genetic disease. Students will use the phrase &#8220;the gene for breast cancer&#8221; or &#8220;the gene for hemophilia&#8221; when these discussions take place. What many think, is that individuals with breast cancer or other genetic diseases have a gene that others do&#8230;]]></description>
				<content:encoded><![CDATA[<p><a href="http://blogs.dnalc.org/wp-content/uploads/2010/02/Mutations.jpg"><img class="alignleft size-thumbnail wp-image-3318" title="Mutations" src="http://blogs.dnalc.org/wp-content/uploads/2010/02/Mutations-150x150.jpg" alt="" width="150" height="150" /></a>It is not uncommon during labs on mutations, to discuss that mutations can cause genetic disease. Students will use the phrase &#8220;the gene for breast cancer&#8221; or &#8220;the gene for hemophilia&#8221; when these discussions take place. What many think, is that individuals with breast cancer or other genetic diseases have a gene that others do not. In reality, they have a gene that everyone has, but the gene has a mutation that affects its function. Genes don’t exist to cause disease. This is a recurrent theme for me!</p>
<p>For example, when someone has hemophilia (a blood clotting disorder), there is a mutation in a gene that normally tells our cells how to make proteins called clotting factors. The mutation prevents a specific clotting factor from being produced, and as a result, the individual carrying the mutation has the disease and the blood doesn’t clot as it should after an injury.  It’s a gene we all have, but if someone has hemophilia, the gene just isn’t working properly.</p>
<p><img class="alignright" src="/oldimages/familytree1.jpg" alt="familytree" width="300" height="108" /></p>
<p>Another common misunderstanding is that if a disease is genetic, it is always inherited. It is true that many disease-causing mutations are inherited. Sometimes though, the mutations that cause genetic diseases develop over time, after we are born. Many of the mutations associated with the development of cancer, accumulate in our cells as we age, and aren’t inherited. These diseases are genetic, because they are caused by mutations in genes, but they aren’t passed from parent to offspring. Less than 10% of all cancers are inherited!</p>
<p>It’s no wonder that not only children, but adults too, are misinformed. These types of incorrect phrases and misinterpretations are printed all the time in magazine and newspapers. So where do you go for correct information? To learn more about the genetics of cancer, go to:  <a href="http://www.insidecancer.org/">www.insidecancer.org</a>. To learn more about basic laws of inheritance, use DNA From the Beginning (<a href="http://www.dnaftb.org/">www.dnaftb.org</a>). To learn more about the inheritance of mutations that cause disease, go to: <a href="http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=gnd">http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=gnd</a>, the Online Mendelian Inheritance in Men (OMIM) database.</p>
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